Musharraf takes on spy agency

As the United States and its Afghan allies wind up their war in Afghanistan, Pakistani President Gen. Pervez Musharraf is just beginning a very different kind of war here in Pakistan.

Starting on Jan. 12, when President Musharraf banned many Islamic militant groups and began the reorganization of his top spy agency, Pakistani radicals, clerics, terrorists, and perhaps even rogue members of Pakistan's own intelligence agencies, have gone underground to regroup. Some observers say that last month's kidnapping of Daniel Pearl, an American reporter for The Wall Street Journal, and this week's foiled rocket attack on US Air Force hangars at Karachi airport, may be the first steps in a long, ugly backlash against Musharraf's crackdown.

But Musharraf's success will largely rest on his ability to maintain loyalty from the powerful Inter-Services Intelligence agency (ISI), the spy wing of Pakistan's three armed services. A quiet and massive overhaul of the ISI has reportedly begun this week.

"The biggest problem we have here are the rogue elements in the intelligence agencies, especially those who at some time became involved with the CIA," says a senior military source who once served in ISI and spoke on condition of anonymity. Even honest ISI agents are used to doing things their way, he says. "In the Soviet war in Afghanistan, the CIA had just preferred taking the backseat and allowing ISI to run the Afghan thing."

For Musharraf, fighting a war on terrorism requires the full cooperation of all law enforcement, military, and intelligence agencies. To consolidate his control and guarantee loyalty, Musharraf is believed to have disbanded ISI units that worked with militant groups and replaced top ISI generals with personal friends. Yet a small group of ISI agents at the ground level may still have the ability either to break the back of Islamic militancy or quietly foster it indefinitely. A few rogue spies may even be helping the very people that have kidnapped Daniel Pearl.

No one knows for sure how how many agents the ISI employs. Its power is not so much seen as felt. Places where foreigners congregate - such as important Pakistani ministries, major hotels, and even taxi stands - generally have ISI agents on staff to monitor activities.

Most ISI agents are soldiers, sailors, or airmen who are temporarily assigned to the ISI for a two-year period, but some have been assigned to a single project for decades, even until retirement.

Among the more dangerous, sources say, are those who acted as Pakistan's official liaison between the Pakistan Army and militant groups, such as the Kashmiri-oriented Harkatul Mujahideen and Lashkar-e-Tayyaba, both of which are on the United States' list of terrorist organizations. The ISI was also a crucial link between Pakistan and the Taliban in Afghanistan.

Getting ISI agents to change direction swiftly would be difficult, the senior military source says, and some may be willfully disobeying orders. Pakistani officials say there is no evidence to suggest that ISI is currently aiding the kidnappers of Mr. Pearl, but there is no question that anyone who investigates the ties between Al Qaeda and Pakistani religious parties and even the ISI is doing so at their own peril.

"Remember, feelings are still so raw, and chasing Al Qaeda is like trailing a wounded tiger," says the senior military source.

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